Base colors

Extension gene
The extension gene controls the production of black and red pigment. It is one of the genes that determines the base color of horses.
Agouti gene
The agouti gene controls the distribution of black on the coat. It is one of the genes that determines the base color of horses.

Modifiers

STX17 gene
The STX17 gene is responsible for the color grey in horses.

Dilutions

MATP gene
The MATP gene is responsible for the dilutions cream, pearl, sunshine and snowdrop in horses.
TBX3 gene
The TBX3 gene is responsible for the dilution dun and non-dun1.
PMEL17 gene
The PMEL gene is responsible for the color silver in horses.

White patterns